IB2: Integrative Bioinformatics and Biostatistics
IB2: Integrative Bioinformatics and Biostatistics
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2
A quantitative tumor-wide analysis of morphological heterogeneity of colorectal adenocarcinoma
CRC is heterogeneous from a morphotype perspective.
Dragomir MP
,
Vlad Popovici
,
Schallenberg S
,
Martina Čarnogurská (Hrivňáková)
,
Horst D
,
Nenutil R
,
Bosman F
,
Eva Budinská
PDF
Project
DOI
Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer
Associations between the gut microbiome and colorectal cancer (CRC) have been uncovered, but larger and more diverse studies are needed …
Piccinno G
,
Thompson KN
,
Manghi P
,
Ghazi AR
,
Thomas AM
,
Blanco-Míguez A
,
Asnicar F
,
Mladenovic K
,
Pinto F
,
Armanini F
,
Punčochář M
,
Piperni E
,
Heidrich V
,
Fackelmann G
,
Ferrero G
,
Tarallo S
,
Nguyen LH
,
Yan Y
,
Keles NA
,
Tuna BG
,
Vymetalkova V
,
Trompetto M
,
Liska V
,
Hucl T
,
Vodicka P
,
Bencsiková B
,
Martina Čarnogurská (Hrivňáková)
,
Vlad Popovici
,
Marmorino F
,
Cremolini C
,
Pardini B
,
Cordero F
,
Song M
,
Chan AT
,
Derosa L
,
Zitvogel L
,
Huttenhower C
,
Naccarati A
,
Eva Budinská
,
Segata N
PDF
Project
DOI
Search for Mutations Connected With Non-Response to Anti-EGFR Therapy in mCRC in the Morphologically Defined Regions of Primary Tumours
Transcriptomics and tumor morphology are intertwined.
Martina Čarnogurská (Hrivňáková)
,
Valeriia Serhiivna Vasylieva
,
Tana Machackova
,
Marie Boudna
,
Lucie Pifkova
,
Jana Orlíčková
,
Tina Catela Ivkovič
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
,
Eva Budinská
PDF
Project
DOI
Impact of the ONCOBIOME network in cancer microbiome research
The European Union-sponsored ONCOBIOME network has spurred an international effort to identify and validate relevant gut …
ZITVOGEL Laurence
,
DEROSA Lisa
,
ROUTY Bertrand
,
LOIBL Sibylle
,
HEINZERLING Lucie
,
ENGSTRAND Lars
,
SEGATA Nicola
,
KROEMER Guido
,
ALVES COSTA SILVA Carolina
,
BARBIERI Daniela
,
BOLEIJ Annemarie
,
BOL Kalijn
,
BRUSSELAERS Nele
,
Eva Budinská
,
CALDAS Carlos
,
CORDERO Francesca
,
CREMOLINI Chiara
,
DAILLERE Romain
,
DENKERT Carsten
,
DURAND Sylvere
,
EHRLICH Stanislav
,
EISINGER François
,
ELKRIEF Arielle
,
FALL Katja
,
FELDER Baerbel
,
FERRERE Gladys
,
FIDELLE Marine
,
GABORIT Jérôme
,
GARIBOLDI Manuela
,
GUINDO Cheick Oumar
,
IEBBA Valerio
,
LEHTIO Janne
,
MARTINEAU Magalie
,
MESSAOUDENE Meriem
,
MONVILLE Florence
,
NACCARATI Alessio
,
PARDINI Barbara
,
PINTO Federica
,
PICCINNO Gianmarco
,
PIZZATO Eugénie
,
Vlad Popovici
,
RACHID Maan Haj
,
TARALLO Sonia
,
SCHULER-THURNER Beatrice
,
SCHULER Gerold
,
SZALLASI Zoltan
,
SOW Cissé
,
TRINCHIERI Giorgio
,
TROCHON Jean-Jacques
,
ZELLER Georg
PDF
Project
DOI
Multiple regulatory events contribute to a widespread circular RNA downregulation in precancer and early stage of colorectal cancer development
BACKGROUND: Early detection of colorectal cancer (CRC) significantly improves its management and patients’ survival. Circular …
Alessandro Camandona
,
Amedeo Gagliardi
,
Nicola Licheri
,
Sonia Tarallo
,
Giulia Francescato
,
Eva Budinská
,
Martina Čarnogurská (Hrivňáková)
,
Barbora Zwinsová
,
Barbara Martinoglio
,
Lorenzo Franchitti
,
Gaetano Gallo
,
Santina Cutrupi
,
Michele De Bortoli
,
Barbara Pardini
,
Alessio Naccarati
,
Giulio Ferrero
PDF
Project
DOI
Bacteriome of the Middle Ear in Children and Young Adults With Cholesteatoma and Retraction Pocket: A Pilot Study
OBJECTIVE: Chronic otitis media (COM) is a common middle ear disease in children and young adults. Dysfunction of the Eustachian tube …
Bartos M
,
Urik M
,
Buresova L
,
Holochova P
,
Eva Budinská
,
Borilova Linhartova P
PDF
DOI
Resistome in the indoor dust samples from workplaces and households: a pilot study
The antibiotic resistance genes (ARGs) limit the susceptibility of bacteria to antimicrobials, representing a problem of high …
Klvanova E
,
Videnska P
,
Barton V
,
Bohm J
,
Splichalova P
,
Koksova V
,
Urik M
,
Lanickova B
,
Prokes R
,
Eva Budinská
,
Klanova J
,
Borilova Linhartova P
PDF
DOI
Fecal tryptophan metabolite profiling in newborns in relation to microbiota and antibiotic treatment
In the first days of life, the newborns’ intestinal microbiota develops simultaneously with the intestinal gut barrier and …
Aust AC
,
Vidova V
,
Coufalikova K
,
Smetanova S
,
Kozeluhova K
,
Micenkova L
,
Videnska P
,
Smatana S
,
Eva Budinská
,
Borek I
,
Janku P
,
Klanova J
,
Spacil Z
,
Thon V
PDF
DOI
Impact of intrapartum antibiotic prophylaxis on the oral and fecal bacteriomes of children in the first week of life
Intrapartum antibiotic prophylaxis (IAP) is commonly used during C-section delivery and in Group B Streptococcus-positive women before …
Eliska Pivrncova
,
Lucie Buresova
,
Iva Kotaskova
,
Petra Videnska
,
Lenka Andryskova
,
Pavel Piler
,
Petr Janku
,
Ivo Borek
,
Jan Bohm
,
Barbara Lanickova
,
Jana Klanova
,
Eva Budinská
,
Petra Borilova Linhartova
PDF
DOI
An invasion front gene expression signature for higher-risk patient selection in stage IIA MSS colon cancer
Stage II colon cancer (CC) encompasses a heterogeneous group of patients with diverse survival experiences: 87% to 58% 5-year relative …
Eva Budinská
,
Martina Čarnogurská (Hrivňáková)
,
Tina Catela Ivkovič
,
Tana Machackova
,
Marie Boudna
,
Lucie Pifkova
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
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