IB2: Integrative Bioinformatics and Biostatistics
IB2: Integrative Bioinformatics and Biostatistics
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An invasion front gene expression signature for higher-risk patient selection in stage IIA MSS colon cancer
Stage II colon cancer (CC) encompasses a heterogeneous group of patients with diverse survival experiences: 87% to 58% 5-year relative …
Eva Budinská
,
Martina Hrivňáková
,
Tina Catela Ivkovič
,
Tana Machackova
,
Marie Boudna
,
Lucie Pifkova
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
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DOI
Additional markers of response to anti-EGFR therapy in metastatic colon cancer: Morphological context matters
Eva Budinská
,
Valeriia Vasylieva
,
Martina Hrivňáková
,
Rudolf Nenutil
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
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Project
Poster
DOI
Identification of high risk patients in stage II pT3N0 microsatellite-stable colorectal cancer
Eva Budinská
,
Tina Catela Ivkovič
,
Martina Hrivňáková
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
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Project
Poster
DOI
QBI SABI 2023
The Spatial Analysis for Biological Imaging workshop.
Vlad Popovici
Mar 27, 2023
1 min read
Importance of tumor sampling in transcriptomics-based risk stratification
Vlad Popovici
,
Tina Catela Ivkovič
,
Martina Hrivňáková
,
Michal Němeček
,
Rudolf Nenutil
,
Lenka Zdražilová-Dubská
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Eva Budinská
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Poster
The impact of tumour morphology landscape on molecular signatures
Eva Budinská
,
Tina Catela Ivkovič
,
Martina Hrivňáková
,
Rudolf Nenutil
,
Michal Němeček
,
Lenka Zdražilová-Dubská
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Vlad Popovici
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Project
Poster
Molecular portraits of major morphological components of colon tumors
We investigate the molecular landscape of the morphotypes.
Vlad Popovici
Colorectal tumour mucosa microbiome is enriched in oral pathogens and defines three subtypes that correlate with markers of tumour progression
Long-term dysbiosis of the gut microbiome has a significant impact on colorectal cancer (CRC) progression and explains part of the …
Barbora Zwinsová
,
Vyacheslav A. Petrov
,
Martina Hrivňáková
,
Stanislav Smatana
,
Lenka Micenková
,
Natálie Kzdová
,
Vlad Popovici
,
Roman Hrstka
,
Roman Šefr
,
Beatrix Bencsiková
,
Lenka Zdražilová-Dubská
,
Veronika Brychtová
,
Rudolf Nenutil
,
Petra Videnska
,
Eva Budinská
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Project
DOI
Consensus molecular subtypes of morphological regions on colorectal tumors
Background
The consensus molecular subtypes (CMS) of colon cancer integrated the results of several different subtyping efforts and led …
Vlad Popovici
,
Tina Catela Ivkovič
,
Martina Hrivňáková
,
Rudolf Nenutil
,
Michal Němeček
,
Lenka Zdražilová-Dubská
,
Ondrej Slabý
,
Beatrix Bencsiková
,
Eva Budinská
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Poster
An explorative analysis of ABCG2/TOP-1 mRNA expression as a biomarker test for FOLFIRI treatment in stage III colon cancer patients: results from retrospective analyses of the PETACC-3 trial
Biomarker-guided treatment for patients with colon cancer is needed. We tested ABCG2 and topoisomerase 1 (TOP1) mRNA expression as …
Jan Stenvang
,
Eva Budinská
,
Eric van Cutsem
,
Fred Bosman
,
Vlad Popovici
,
Nils Brünner
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